Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000582.1 Corchorus capsularis cultivar CVL-1 contig00582, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 957

Length: 1595
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32


Found at i:970 original size:12 final size:12

Alignment explanation


    Indices: 953--987  Score: 61
    Period size: 12  Copynumber: 2.8  Consensus size: 12

        943 GCTTTAATGG

                        
        953 TATATTATATTA
          1 TATATTATATTA

                        
        965 TATATTATATTA
          1 TATATTATATTA

                       
        977 TATATATATAT
          1 TATAT-TATAT

        988 AGGGAAAAAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  12   17  0.77
  13    5  0.23

ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57


Consensus pattern (12 bp):   
TATATTATATTA
Done.