Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005836.1 Corchorus capsularis cultivar CVL-1 contig05854, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19538

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
631--679
23
2.1
23
100
0
98
34
24
8
32
1.85
3663--3709
1
47.0
1
86
0
67
93
6
0
0
0.34
3663--3758
14
6.7
14
82
11
97
84
15
0
0
0.63
3663--3758
5
21.0
5
90
7
86
84
15
0
0
0.63
3682--3756
4
18.8
4
85
13
77
81
18
0
0
0.69
8989--9048
29
2.1
29
93
0
102
15
38
5
41
1.68
14101--14180
2
39.5
2
70
7
54
40
11
1
47
1.47
14131--14163
12
2.8
12
100
0
66
33
15
0
51
1.43
15293--15367
3
25.3
3
94
2
134
33
36
0
30
1.58
16251--16353
53
2.0
52
88
1
152
35
30
19
14
1.92
17835--17960
22
5.8
21
71
10
83
38
10
15
36
1.81
17835--17960
44
2.9
43
73
11
121
38
10
15
36
1.81
18066--18544
22
22.5
21
69
17
118
38
9
16
36
1.80
18085--18187
43
2.4
42
84
11
129
41
9
10
37
1.73
18175--18201
14
1.9
14
100
0
54
55
14
0
29
1.40
18244--18367
22
5.6
22
80
3
124
35
7
18
38
1.79
18244--18339
45
2.2
44
85
7
131
36
6
19
37
1.77
18508--18549
22
1.9
22
90
0
66
52
4
11
30
1.59
18737--18791
27
2.0
28
89
10
87
40
12
10
36
1.79
18927--19007
30
2.6
31
88
1
110
29
14
11
44
1.80
19120--19211
31
3.1
30
90
4
150
39
13
15
32
1.85

Tables:   1

The End!