Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005842.1 Corchorus capsularis cultivar CVL-1 contig05860, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5853
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34


Found at i:1955 original size:12 final size:13

Alignment explanation


    Indices: 1938--1968  Score: 62
    Period size: 13  Copynumber: 2.4  Consensus size: 13

       1928 TTTACATTGT

                         
       1938 AAAAAATTAAAAA
          1 AAAAAATTAAAAA

                         
       1951 AAAAAATTAAAAA
          1 AAAAAATTAAAAA

                 
       1964 AAAAA
          1 AAAAA

       1969 GGTTCATTCG


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   18  1.00

ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13


Consensus pattern (13 bp):   
AAAAAATTAAAAA

Found at i:3130 original size:29 final size:29

Alignment explanation


    Indices: 3098--3156  Score: 118
    Period size: 29  Copynumber: 2.0  Consensus size: 29

       3088 CTGCACATTC

                                         
       3098 ATCCTTTGTTTGGAAGAGAAAAAAACAAA
          1 ATCCTTTGTTTGGAAGAGAAAAAAACAAA

                                         
       3127 ATCCTTTGTTTGGAAGAGAAAAAAACAAA
          1 ATCCTTTGTTTGGAAGAGAAAAAAACAAA

             
       3156 A
          1 A

       3157 ACAAAAAAGT


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   30  1.00

ACGTcount: A:0.49, C:0.10, G:0.17, T:0.24


Consensus pattern (29 bp):   
ATCCTTTGTTTGGAAGAGAAAAAAACAAA
Done.