Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005844.1 Corchorus capsularis cultivar CVL-1 contig05862, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7292
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32


Found at i:1928 original size:18 final size:18

Alignment explanation


    Indices: 1905--1941  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       1895 TATATCATCC

                  *           
       1905 ATAATATATCCTTCAAAA
          1 ATAATAAATCCTTCAAAA

                         *    
       1923 ATAATAAATCCTTTAAAA
          1 ATAATAAATCCTTCAAAA

             
       1941 A
          1 A

       1942 ATACATTCTT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.54, C:0.14, G:0.00, T:0.32


Consensus pattern (18 bp):   
ATAATAAATCCTTCAAAA

Found at i:5156 original size:2 final size:2

Alignment explanation


    Indices: 5149--5184  Score: 72
    Period size: 2  Copynumber: 18.0  Consensus size: 2

       5139 AGTATAGTAC

                                                                 
       5149 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       5185 GAATATCTAT


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   34  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.