Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005845.1 Corchorus capsularis cultivar CVL-1 contig05863, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9928
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


Found at i:6309 original size:13 final size:14

Alignment explanation


    Indices: 6291--6320  Score: 53
    Period size: 14  Copynumber: 2.2  Consensus size: 14

       6281 CACATTGATC

                          
       6291 AAAAATA-AAAAAA
          1 AAAAATACAAAAAA

                          
       6304 AAAAATACAAAAAA
          1 AAAAATACAAAAAA

               
       6318 AAA
          1 AAA

       6321 TTTACTCCCA


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13    7  0.44
  14    9  0.56

ACGTcount: A:0.90, C:0.03, G:0.00, T:0.07


Consensus pattern (14 bp):   
AAAAATACAAAAAA
Done.