Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005846.1 Corchorus capsularis cultivar CVL-1 contig05864, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 931

Length: 1552
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33


Found at i:557 original size:18 final size:18

Alignment explanation


    Indices: 543--578  Score: 54
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        533 ATCAGCATAT

                              
        543 GACATTACATTAGCATTC
          1 GACATTACATTAGCATTC

                  *     *     
        561 GACATTGCATTATCATTC
          1 GACATTACATTAGCATTC

        579 TAACCTGCAT


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.31, C:0.22, G:0.11, T:0.36


Consensus pattern (18 bp):   
GACATTACATTAGCATTC
Done.