Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005855.1 Corchorus capsularis cultivar CVL-1 contig05873, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4089
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30


Found at i:3316 original size:21 final size:21

Alignment explanation


    Indices: 3299--3346  Score: 78
    Period size: 21  Copynumber: 2.3  Consensus size: 21

       3289 GGCCTTGTTC

                                 
       3299 CTGCCTCATTTCTTCTTGTGA
          1 CTGCCTCATTTCTTCTTGTGA

                         * *     
       3320 CTGCCTCATTTCTCCCTGTGA
          1 CTGCCTCATTTCTTCTTGTGA

                  
       3341 CTGCCT
          1 CTGCCT

       3347 TAACTGTTGG


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  21   25  1.00

ACGTcount: A:0.08, C:0.35, G:0.15, T:0.42


Consensus pattern (21 bp):   
CTGCCTCATTTCTTCTTGTGA
Done.