Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005857.1 Corchorus capsularis cultivar CVL-1 contig05875, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9687
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.33


Found at i:962 original size:6 final size:6

Alignment explanation


    Indices: 951--1003  Score: 88
    Period size: 6  Copynumber: 8.8  Consensus size: 6

        941 CTTATATAAT

                                        *                         *
        951 ATATAG ATATAG ATATAG ATATAG CTATAG ATATAG ATATAG ATATAT
          1 ATATAG ATATAG ATATAG ATATAG ATATAG ATATAG ATATAG ATATAG

                 
        999 ATATA
          1 ATATA

       1004 ATTAAAATCA


Statistics
Matches: 44,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   6   44  1.00

ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36


Consensus pattern (6 bp):   
ATATAG

Found at i:3423 original size:26 final size:26

Alignment explanation


    Indices: 3389--3442  Score: 81
    Period size: 26  Copynumber: 2.1  Consensus size: 26

       3379 ATAATAAACC

                                      
       3389 TTCCAATAGTTTTTGAATGAAGAGGA
          1 TTCCAATAGTTTTTGAATGAAGAGGA

                *          **         
       3415 TTCCTATAGTTTTTGGTTGAAGAGGA
          1 TTCCAATAGTTTTTGAATGAAGAGGA

              
       3441 TT
          1 TT

       3443 GCGTGGAGAT


Statistics
Matches: 25,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  26   25  1.00

ACGTcount: A:0.28, C:0.07, G:0.24, T:0.41


Consensus pattern (26 bp):   
TTCCAATAGTTTTTGAATGAAGAGGA
Done.