Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005864.1 Corchorus capsularis cultivar CVL-1 contig05882, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4444
ACGTcount: A:0.34, C:0.22, G:0.13, T:0.31


Found at i:1608 original size:24 final size:24

Alignment explanation


    Indices: 1542--1610  Score: 86
    Period size: 24  Copynumber: 2.9  Consensus size: 24

       1532 GGCTCATTTT

                                    
       1542 CAGCATCTAAACCAGCATCATTAA
          1 CAGCATCTAAACCAGCATCATTAA

              *            *         
       1566 CATCAT-TCAAACCAACATCATTAA
          1 CAGCATCT-AAACCAGCATCATTAA

                       **        
       1590 CAGCATCTAAAATAGCATCAT
          1 CAGCATCTAAACCAGCATCAT

       1611 GTGGATCATC


Statistics
Matches: 37,  Mismatches: 6, Indels: 4
        0.79            0.13        0.09

Matches are distributed among these distances:
  23    1  0.03
  24   35  0.95
  25    1  0.03

ACGTcount: A:0.43, C:0.28, G:0.06, T:0.23


Consensus pattern (24 bp):   
CAGCATCTAAACCAGCATCATTAA
Done.