Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005868.1 Corchorus capsularis cultivar CVL-1 contig05886, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12226

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2084--2216
70
1.9
70
84
0
176
58
12
16
12
1.63
3643--3680
20
1.9
20
88
0
58
21
36
10
31
1.87
3900--4053
33
4.6
33
85
0
182
16
38
30
13
1.88
4771--4817
19
2.3
19
85
10
58
82
14
0
2
0.75
9084--9132
11
4.4
11
81
2
53
44
2
0
53
1.12
10984--11257
57
4.7
58
89
4
367
28
32
19
19
1.96
10984--11257
115
2.4
116
87
4
367
28
32
19
19
1.96
11008--11290
57
4.9
58
87
4
324
29
31
19
19
1.96
11051--11283
116
2.0
115
85
4
317
30
32
18
18
1.95
11314--11549
28
9.6
27
68
26
177
39
27
14
17
1.89
11342--11379
20
1.9
20
94
0
67
34
36
18
10
1.85
11313--11549
48
4.9
48
98
0
447
39
27
14
17
1.89
11390--11523
20
5.9
20
72
24
106
38
29
14
17
1.89
11952--12207
29
8.8
29
88
0
350
28
25
21
24
1.99

Tables:   1

The End!