Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005870.1 Corchorus capsularis cultivar CVL-1 contig05888, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3565
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34


Found at i:2679 original size:13 final size:12

Alignment explanation


    Indices: 2661--2691  Score: 53
    Period size: 13  Copynumber: 2.5  Consensus size: 12

       2651 TACTTCTTTC

                        
       2661 TTTTTGTTTTTT
          1 TTTTTGTTTTTT

                         
       2673 GTTTTTGTTTTTT
          1 -TTTTTGTTTTTT

                  
       2686 TTTTTG
          1 TTTTTG

       2692 CACACTTAAA


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  12    6  0.33
  13   12  0.67

ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87


Consensus pattern (12 bp):   
TTTTTGTTTTTT

Found at i:3385 original size:2 final size:2

Alignment explanation


    Indices: 3378--3402  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

       3368 TCATTAAATC

                                                 
       3378 AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT A

       3403 CTAGTATTTA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.