Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005873.1 Corchorus capsularis cultivar CVL-1 contig05891, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3630
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.31


Found at i:2446 original size:13 final size:13

Alignment explanation


    Indices: 2428--2458  Score: 53
    Period size: 13  Copynumber: 2.4  Consensus size: 13

       2418 CCGATATAAG

                         
       2428 AATTACTAATTGA
          1 AATTACTAATTGA

                   *     
       2441 AATTACTGATTGA
          1 AATTACTAATTGA

                 
       2454 AATTA
          1 AATTA

       2459 TGGATAGGCA


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  13   17  1.00

ACGTcount: A:0.45, C:0.06, G:0.10, T:0.39


Consensus pattern (13 bp):   
AATTACTAATTGA
Done.