Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005876.1 Corchorus capsularis cultivar CVL-1 contig05894, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5297
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38


Found at i:5243 original size:44 final size:44

Alignment explanation


    Indices: 5194--5282  Score: 178
    Period size: 44  Copynumber: 2.0  Consensus size: 44

       5184 AGAAGTAATA

                                                        
       5194 ATTTTAAAAAATTCCAGCCATTGGATTTAATACTCTTTTCATAT
          1 ATTTTAAAAAATTCCAGCCATTGGATTTAATACTCTTTTCATAT

                                                        
       5238 ATTTTAAAAAATTCCAGCCATTGGATTTAATACTCTTTTCATAT
          1 ATTTTAAAAAATTCCAGCCATTGGATTTAATACTCTTTTCATAT

             
       5282 A
          1 A

       5283 AATTATGCAC


Statistics
Matches: 45,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  44   45  1.00

ACGTcount: A:0.35, C:0.16, G:0.07, T:0.43


Consensus pattern (44 bp):   
ATTTTAAAAAATTCCAGCCATTGGATTTAATACTCTTTTCATAT
Done.