Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005890.1 Corchorus capsularis cultivar CVL-1 contig05908, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3756

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106--249
52
2.8
52
89
1
216
30
14
13
40
1.85
3024--3078
6
9.5
6
79
15
62
83
0
16
0
0.64
3022--3094
17
4.4
16
81
16
78
80
0
19
0
0.71
3024--3093
11
6.5
10
75
18
61
81
0
18
0
0.69
3022--3094
27
2.9
26
86
9
98
80
0
19
0
0.71
3028--3094
9
7.7
9
73
23
63
79
0
20
0
0.74
3470--3518
18
2.7
19
81
15
59
79
2
16
2
0.92
3472--3507
12
2.9
12
95
4
63
83
2
13
0
0.76
3464--3540
26
3.3
24
75
20
58
74
1
16
7
1.12
3502--3556
28
2.0
26
89
6
83
67
0
18
14
1.24
3502--3556
27
2.1
27
90
10
87
67
0
18
14
1.24

Tables:   1

The End!