Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005898.1 Corchorus capsularis cultivar CVL-1 contig05916, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2460
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.33


Found at i:2342 original size:74 final size:74

Alignment explanation


    Indices: 2256--2412  Score: 262
    Period size: 74  Copynumber: 2.1  Consensus size: 74

       2246 TTAAGGAAGG

                *                              *    *             *          
       2256 GAAATGTGTAATTACGAAAAAGGGTAGAAGGAAAAGGAATGGGGGAAACTCATAGAGGGGCTTTT
          1 GAAAAGTGTAATTACGAAAAAGGGTAGAAGGAAAAAGAATAGGGGAAACTCATAAAGGGGCTTTT

                      
       2321 TAGTCATCC-
         66 TAGTCA-CCT

                                                                             
       2330 GAAAAGTGTAATTACGAAAAAGGGTAGAAGGAAAAAGAATAGGGGAAACTCATAAAGGGGCTTTT
          1 GAAAAGTGTAATTACGAAAAAGGGTAGAAGGAAAAAGAATAGGGGAAACTCATAAAGGGGCTTTT

                     
       2395 TAGTCACCT
         66 TAGTCACCT

                     
       2404 GAAAAGTGT
          1 GAAAAGTGT

       2413 GAAAAGACCA


Statistics
Matches: 78,  Mismatches: 4, Indels: 2
        0.93            0.05        0.02

Matches are distributed among these distances:
  73    2  0.03
  74   76  0.97

ACGTcount: A:0.41, C:0.09, G:0.29, T:0.21


Consensus pattern (74 bp):   
GAAAAGTGTAATTACGAAAAAGGGTAGAAGGAAAAAGAATAGGGGAAACTCATAAAGGGGCTTTT
TAGTCACCT
Done.