Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005904.1 Corchorus capsularis cultivar CVL-1 contig05922, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4502
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34


Found at i:2387 original size:18 final size:19

Alignment explanation


    Indices: 2354--2389  Score: 56
    Period size: 18  Copynumber: 1.9  Consensus size: 19

       2344 CAAGCTTTTT

                               
       2354 CAAACTATAACCTTAATGC
          1 CAAACTATAACCTTAATGC

                     *        
       2373 CAAACTA-AGCCTTAATG
          1 CAAACTATAACCTTAATG

       2390 TATGCCTTTA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    9  0.56
  19    7  0.44

ACGTcount: A:0.42, C:0.25, G:0.08, T:0.25


Consensus pattern (19 bp):   
CAAACTATAACCTTAATGC
Done.