Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005909.1 Corchorus capsularis cultivar CVL-1 contig05927, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6348

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2038--2076
20
2.0
20
94
0
69
41
17
10
30
1.83
2133--2170
18
2.1
18
85
9
51
2
10
2
84
0.83
2641--2731
27
3.4
27
81
7
96
42
26
15
15
1.86
3157--3331
19
9.3
19
71
18
89
41
5
22
30
1.77
3166--3234
34
2.0
34
97
0
129
36
2
24
36
1.71
3262--3352
38
2.4
38
85
3
112
43
6
24
25
1.78
3262--3343
19
4.3
19
85
0
83
42
7
24
25
1.80
3411--3629
38
5.8
38
81
5
210
29
19
21
30
1.97
3828--3895
21
3.5
21
67
19
65
27
14
26
30
1.95
3822--3895
37
2.0
37
100
0
148
29
13
24
32
1.93
4667--4729
12
4.9
13
79
12
69
3
17
1
77
0.97
4666--4729
13
5.1
12
73
19
51
3
18
1
76
1.00
4767--4826
27
2.2
27
96
0
111
31
16
11
40
1.85

Tables:   1

The End!