Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005913.1 Corchorus capsularis cultivar CVL-1 contig05931, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3648
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.34


Found at i:1841 original size:18 final size:18

Alignment explanation


    Indices: 1803--1841  Score: 51
    Period size: 18  Copynumber: 2.2  Consensus size: 18

       1793 TGCAGCGATG

                *       *   * 
       1803 GAGATTAGTTTTTCTCTT
          1 GAGAGTAGTTTTGCTCCT

                              
       1821 GAGAGTAGTTTTGCTCCT
          1 GAGAGTAGTTTTGCTCCT

               
       1839 GAG
          1 GAG

       1842 CCATATAAAT


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.18, C:0.13, G:0.26, T:0.44


Consensus pattern (18 bp):   
GAGAGTAGTTTTGCTCCT
Done.