Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005919.1 Corchorus capsularis cultivar CVL-1 contig05937, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15418

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--28
1
28.0
1
100
0
56
0
0
0
100
0.00
3881--3907
12
2.2
12
100
0
54
25
11
7
55
1.61
9807--9856
21
2.4
21
79
0
55
36
8
14
42
1.74
11872--11915
22
2.0
22
86
0
61
36
13
18
31
1.90
12081--12155
22
3.4
21
78
10
80
32
21
6
40
1.79
12171--12357
22
8.6
21
74
10
135
33
11
10
44
1.75
12236--12339
44
2.4
44
88
0
154
35
11
11
41
1.78
12171--12339
66
2.6
62
79
13
162
34
11
10
43
1.75
12171--12359
44
4.3
43
75
8
150
32
11
11
44
1.75
12733--12762
2
15.0
2
100
0
60
50
0
0
50
1.00
14332--14867
22
24.6
22
69
12
164
35
15
9
39
1.80
14644--14701
23
2.5
23
91
0
89
43
13
5
37
1.67
14332--15365
44
24.0
44
66
14
241
34
15
9
39
1.81
14972--15361
22
17.6
23
71
14
134
33
15
10
40
1.81

Tables:   1

The End!