Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005920.1 Corchorus capsularis cultivar CVL-1 contig05938, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2454
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35


Found at i:877 original size:23 final size:25

Alignment explanation


    Indices: 836--895  Score: 70
    Period size: 23  Copynumber: 2.5  Consensus size: 25

        826 TCGTTTTTTC

                         **       *  
        836 TAAAAAAAAATTGTGTTTT-C-CCT
          1 TAAAAAAAAATTGCATTTTGCGACT

                                   * 
        859 TAAAAAAAAATTGCATTTTGCGATT
          1 TAAAAAAAAATTGCATTTTGCGACT

                        
        884 TAAAAAAAAATT
          1 TAAAAAAAAATT

        896 TGCGAAAAGA


Statistics
Matches: 31,  Mismatches: 4, Indels: 2
        0.84            0.11        0.05

Matches are distributed among these distances:
  23   17  0.55
  24    1  0.03
  25   13  0.42

ACGTcount: A:0.48, C:0.08, G:0.08, T:0.35


Consensus pattern (25 bp):   
TAAAAAAAAATTGCATTTTGCGACT
Done.