Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005924.1 Corchorus capsularis cultivar CVL-1 contig05942, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2733
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.32


Found at i:2112 original size:24 final size:24

Alignment explanation


    Indices: 2085--2132  Score: 96
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       2075 CGGCGGCGCT

                                    
       2085 CTGTCGAGAGAAGAAAGAAACAAA
          1 CTGTCGAGAGAAGAAAGAAACAAA

                                    
       2109 CTGTCGAGAGAAGAAAGAAACAAA
          1 CTGTCGAGAGAAGAAAGAAACAAA

       2133 GTAATAAGAG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.54, C:0.12, G:0.25, T:0.08


Consensus pattern (24 bp):   
CTGTCGAGAGAAGAAAGAAACAAA

Found at i:2262 original size:27 final size:27

Alignment explanation


    Indices: 2222--2298  Score: 109
    Period size: 27  Copynumber: 2.9  Consensus size: 27

       2212 CTAGGGTCGT

                   *                   
       2222 CCAAGGGTATTTTGGTCATTTTTGCAC
          1 CCAAGGGCATTTTGGTCATTTTTGCAC

               *                    *  
       2249 CCAGGGGCATTTTGGTCATTTTTGTAC
          1 CCAAGGGCATTTTGGTCATTTTTGCAC

            *            *         
       2276 TCAAGGGCATTTTAGTCATTTTT
          1 CCAAGGGCATTTTGGTCATTTTT

       2299 AGGTTCACCT


Statistics
Matches: 44,  Mismatches: 6, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  27   44  1.00

ACGTcount: A:0.18, C:0.17, G:0.22, T:0.43


Consensus pattern (27 bp):   
CCAAGGGCATTTTGGTCATTTTTGCAC
Done.