Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005929.1 Corchorus capsularis cultivar CVL-1 contig05947, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 697

Length: 1162
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.29


Found at i:167 original size:33 final size:32

Alignment explanation


    Indices: 117--239  Score: 133
    Period size: 33  Copynumber: 3.7  Consensus size: 32

        107 CCGCGCAACA

                                              
        117 CCGGCCACAAGACCGGCCACGCGACATGGACATG
          1 CCGGCCAC-A-ACCGGCCACGCGACATGGACATG

                                               
        151 TCCGGCCATC-ACCGGCCACGCGACATGGACATGG
          1 -CCGGCCA-CAACCGGCCACGCGACATGGACAT-G

                 *           **         *    
        185 CCGGCTACAACCGGCCAAACGAC-TCGGCCATG
          1 CCGGCCACAACCGGCCACGCGACAT-GGACATG

              *                    
        217 CCCGCCACAACCGGCCACGCGAC
          1 CCGGCCACAACCGGCCACGCGAC

        240 CCTTTGTCTA


Statistics
Matches: 76,  Mismatches: 8, Indels: 11
        0.80            0.08        0.12

Matches are distributed among these distances:
  32   22  0.29
  33   45  0.59
  34    1  0.01
  35    7  0.09
  36    1  0.01

ACGTcount: A:0.24, C:0.42, G:0.27, T:0.07


Consensus pattern (32 bp):   
CCGGCCACAACCGGCCACGCGACATGGACATG
Done.