Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005933.1 Corchorus capsularis cultivar CVL-1 contig05951, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3653
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31


Found at i:3379 original size:33 final size:33

Alignment explanation


    Indices: 3337--3415  Score: 113
    Period size: 33  Copynumber: 2.4  Consensus size: 33

       3327 TGGTGCGCCA

                                          *   
       3337 AGCGATGGCCGGTGTTGGCCGGGCATCTCCGAGT
          1 AGCG-TGGCCGGTGTTGGCCGGGCATCTCCAAGT

                                   *         
       3371 AGCGTGGCCGGTGTTGGCCGGGCTTCTCCAAGT
          1 AGCGTGGCCGGTGTTGGCCGGGCATCTCCAAGT

            *  *        
       3404 CGCATGGCCGGT
          1 AGCGTGGCCGGT

       3416 CACTCGCACC


Statistics
Matches: 41,  Mismatches: 4, Indels: 1
        0.89            0.09        0.02

Matches are distributed among these distances:
  33   37  0.90
  34    4  0.10

ACGTcount: A:0.10, C:0.28, G:0.41, T:0.22


Consensus pattern (33 bp):   
AGCGTGGCCGGTGTTGGCCGGGCATCTCCAAGT
Done.