Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005935.1 Corchorus capsularis cultivar CVL-1 contig05953, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3215
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.39


Found at i:2050 original size:32 final size:33

Alignment explanation


    Indices: 2009--2076  Score: 111
    Period size: 32  Copynumber: 2.1  Consensus size: 33

       1999 TATATATTTG

                       *                     
       2009 CAATAATTATGTATGTTACGCATACTCT-GTAA
          1 CAATAATTATGCATGTTACGCATACTCTAGTAA

                                *            
       2041 CAATAATTATGCATGTTACGTATACTCTAGTAA
          1 CAATAATTATGCATGTTACGCATACTCTAGTAA

               
       2074 CAA
          1 CAA

       2077 AAATCAAAGT


Statistics
Matches: 33,  Mismatches: 2, Indels: 1
        0.92            0.06        0.03

Matches are distributed among these distances:
  32   26  0.79
  33    7  0.21

ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35


Consensus pattern (33 bp):   
CAATAATTATGCATGTTACGCATACTCTAGTAA
Done.