Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005941.1 Corchorus capsularis cultivar CVL-1 contig05959, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2376
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.38


Found at i:1090 original size:21 final size:21

Alignment explanation


    Indices: 1042--1082  Score: 73
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1032 GCCTTGTTCT

                                 
       1042 TGCCTCATCTCTTCTTGTGAA
          1 TGCCTCATCTCTTCTTGTGAA

                    *           
       1063 TGCCTCATTTCTTCTTGTGA
          1 TGCCTCATCTCTTCTTGTGA

       1083 CTGTCTCAAT


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.12, C:0.27, G:0.15, T:0.46


Consensus pattern (21 bp):   
TGCCTCATCTCTTCTTGTGAA
Done.