Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005946.1 Corchorus capsularis cultivar CVL-1 contig05964, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 951

Length: 1585
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.36


Found at i:7 original size:2 final size:2

Alignment explanation


    Indices: 1--26  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

                                                  
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT

         27 GTTTAATGCA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:1286 original size:64 final size:64

Alignment explanation


    Indices: 1181--1309  Score: 249
    Period size: 64  Copynumber: 2.0  Consensus size: 64

       1171 AAATTCTCTC

                                                                            
       1181 AACCTTCAAACTTTCAAATCTCAATATTGACAAATCAATATTCATATCCATTTAAACTTAAACT
          1 AACCTTCAAACTTTCAAATCTCAATATTGACAAATCAATATTCATATCCATTTAAACTTAAACT

                                                *                           
       1245 AACCTTCAAACTTTCAAATCTCAATATTGACAAATCCATATTCATATCCATTTAAACTTAAACT
          1 AACCTTCAAACTTTCAAATCTCAATATTGACAAATCAATATTCATATCCATTTAAACTTAAACT

             
       1309 A
          1 A

       1310 GTCATTACTT


Statistics
Matches: 64,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  64   64  1.00

ACGTcount: A:0.42, C:0.22, G:0.02, T:0.34


Consensus pattern (64 bp):   
AACCTTCAAACTTTCAAATCTCAATATTGACAAATCAATATTCATATCCATTTAAACTTAAACT
Done.