Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005951.1 Corchorus capsularis cultivar CVL-1 contig05969, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3967
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28


Found at i:582 original size:7 final size:7

Alignment explanation


    Indices: 570--606  Score: 65
    Period size: 7  Copynumber: 5.3  Consensus size: 7

        560 TGCATAGTCA

                   
        570 CTGCACT
          1 CTGCACT

                   
        577 CTGCACT
          1 CTGCACT

                   
        584 CTGCACT
          1 CTGCACT

                *  
        591 CTGCTCT
          1 CTGCACT

                   
        598 CTGCACT
          1 CTGCACT

              
        605 CT
          1 CT

        607 TCAATCAGAA


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   7   28  1.00

ACGTcount: A:0.11, C:0.43, G:0.14, T:0.32


Consensus pattern (7 bp):   
CTGCACT

Found at i:1446 original size:14 final size:14

Alignment explanation


    Indices: 1427--1456  Score: 51
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       1417 TTGATCTCGA

                    *     
       1427 AAGCTTAACCGCCG
          1 AAGCTTAAACGCCG

                          
       1441 AAGCTTAAACGCCG
          1 AAGCTTAAACGCCG

              
       1455 AA
          1 AA

       1457 TTTAATGGAA


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.37, C:0.30, G:0.20, T:0.13


Consensus pattern (14 bp):   
AAGCTTAAACGCCG
Done.