Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005955.1 Corchorus capsularis cultivar CVL-1 contig05973, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3193
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.38


Found at i:2739 original size:21 final size:21

Alignment explanation


    Indices: 2710--2753  Score: 61
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       2700 TTTAGGGAGC

                *         *  *   
       2710 TTTATTGTAATGTTTTAGCCT
          1 TTTACTGTAATGTTATACCCT

                                 
       2731 TTTACTGTAATGTTATACCCT
          1 TTTACTGTAATGTTATACCCT

              
       2752 TT
          1 TT

       2754 ATAACTTGTA


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.20, C:0.14, G:0.11, T:0.55


Consensus pattern (21 bp):   
TTTACTGTAATGTTATACCCT
Done.