Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005956.1 Corchorus capsularis cultivar CVL-1 contig05974, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7856
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30


Found at i:7433 original size:13 final size:13

Alignment explanation


    Indices: 7415--7440  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       7405 AAGATCCCCT

                         
       7415 TAACTCGATTGAG
          1 TAACTCGATTGAG

                         
       7428 TAACTCGATTGAG
          1 TAACTCGATTGAG

       7441 AGATACAACT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31


Consensus pattern (13 bp):   
TAACTCGATTGAG
Done.