Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005958.1 Corchorus capsularis cultivar CVL-1 contig05976, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17818

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1294--1329
13
2.7
13
91
4
54
0
0
11
88
0.50
1293--1336
19
2.3
19
88
7
63
0
0
13
86
0.57
1287--1335
24
2.0
25
88
4
73
0
0
14
85
0.59
1292--1333
14
3.0
14
86
10
59
0
0
14
85
0.59
3972--4233
129
2.0
130
92
2
438
31
18
19
30
1.96
5813--5928
36
3.2
36
69
15
103
24
12
8
54
1.66
5811--5963
73
2.1
73
96
1
281
25
15
7
51
1.69
5840--6066
37
6.2
36
81
9
228
28
20
7
43
1.79
5849--6069
73
3.0
72
85
5
248
27
21
7
43
1.79
6058--6352
37
8.3
37
79
14
291
25
25
8
40
1.84
6057--6350
139
2.1
142
84
8
386
25
25
9
40
1.85
6199--6257
18
3.2
18
65
21
50
27
25
6
40
1.80
6181--6239
19
3.2
19
64
22
52
25
25
8
40
1.83
6057--6351
74
4.2
71
82
8
327
25
25
9
40
1.85
6295--6353
19
3.1
19
65
18
50
18
25
11
44
1.84
6380--6651
41
7.3
36
77
13
121
24
18
11
45
1.82
6449--6551
41
2.5
41
96
0
188
19
18
13
48
1.81
6550--6743
37
5.2
36
83
6
210
27
20
8
44
1.79
6550--6724
73
2.4
73
83
7
221
27
20
8
44
1.79
8554--8596
6
7.2
6
91
0
59
30
51
0
18
1.47
16340--16418
31
2.5
30
84
11
106
30
11
21
36
1.89

Tables:   1

The End!