genome.fa.s5959.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005959.1 Corchorus capsularis cultivar CVL-1 contig05977, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104253

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
707--739	3	11.0	3	93	0	57	36	0	30	33	1.58
16701--16750	22	2.3	22	83	10	66	16	12	18	54	1.72
20480--20679	31	6.6	29	73	14	147	35	18	19	27	1.95
20484--20646	60	2.7	60	91	1	256	34	19	19	26	1.96
20604--20679	32	2.4	31	93	2	125	40	18	18	22	1.91
20709--20867	60	2.7	60	92	0	264	27	20	19	32	1.97
20714--20874	31	5.3	30	69	16	127	27	19	20	32	1.97
28786--29175	156	2.5	155	78	11	431	30	14	21	33	1.93
33600--33624	12	2.1	12	100	0	50	56	0	8	36	1.29
45495--45566	37	1.9	38	91	2	119	37	16	8	37	1.79
46762--46823	31	2.0	32	90	3	99	33	19	6	40	1.77
48338--48406	35	1.9	37	88	5	106	34	15	8	40	1.79
47747--48516	388	2.0	388	96	0	1432	39	15	11	33	1.83
50162--50213	26	2.0	25	85	3	68	59	3	5	30	1.39
50849--50917	35	1.9	37	91	5	115	36	15	8	39	1.79
52777--52855	31	2.5	31	95	4	142	31	8	24	35	1.86
56389--56464	21	3.6	21	89	0	116	32	38	19	9	1.84
59651--59719	27	2.6	26	81	6	77	42	17	21	18	1.90
63474--63498	1	25.0	1	100	0	50	0	0	0	100	0.00
64651--64675	5	5.0	5	100	0	50	80	0	0	20	0.72
67357--67393	16	2.2	16	90	4	56	81	8	0	10	0.89
77589--77700	38	2.8	39	83	5	145	45	10	14	29	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91501--91680	88	2.0	89	98	1	353	25	14	18	41	1.89
99577--99607	2	15.5	2	100	0	62	51	0	0	48	1.00
100323--100449	66	1.9	65	91	1	209	41	6	8	43	1.61
100571--100612	21	2.0	21	90	9	68	52	2	14	30	1.54
100774--100799	2	13.0	2	100	0	52	50	0	0	50	1.00
100898--100941	21	2.2	20	83	4	52	56	4	6	31	1.46
102775--102826	3	17.3	3	95	0	95	30	1	0	67	1.02
103104--103149	21	2.2	21	96	0	83	36	10	17	34	1.85

Tables:   1

The End!