Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005960.1 Corchorus capsularis cultivar CVL-1 contig05978, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11045
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28


Found at i:6253 original size:12 final size:12

Alignment explanation


    Indices: 6236--6260  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       6226 AGGGTTCGTT

                        
       6236 CATACTGTAAGA
          1 CATACTGTAAGA

                        
       6248 CATACTGTAAGA
          1 CATACTGTAAGA

             
       6260 C
          1 C

       6261 TTATCTGATC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24


Consensus pattern (12 bp):   
CATACTGTAAGA
Done.