Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005965.1 Corchorus capsularis cultivar CVL-1 contig05983, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4589
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30


Found at i:993 original size:15 final size:15

Alignment explanation


    Indices: 973--1013  Score: 73
    Period size: 15  Copynumber: 2.7  Consensus size: 15

        963 CCTTACTAAG

                           
        973 CCAGAAGATGAGCCA
          1 CCAGAAGATGAGCCA

                           
        988 CCAGAAGATGAGCCA
          1 CCAGAAGATGAGCCA

             *         
       1003 CAAGAAGATGA
          1 CCAGAAGATGA

       1014 ACAACTTGAA


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  15   25  1.00

ACGTcount: A:0.44, C:0.22, G:0.27, T:0.07


Consensus pattern (15 bp):   
CCAGAAGATGAGCCA

Found at i:2474 original size:12 final size:12

Alignment explanation


    Indices: 2457--2481  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       2447 CTTTCCTTGC

                        
       2457 ATTGCTTTGATT
          1 ATTGCTTTGATT

                        
       2469 ATTGCTTTGATT
          1 ATTGCTTTGATT

             
       2481 A
          1 A

       2482 ATTACCTATT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.20, C:0.08, G:0.16, T:0.56


Consensus pattern (12 bp):   
ATTGCTTTGATT
Done.