Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005971.1 Corchorus capsularis cultivar CVL-1 contig05989, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13133
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.36


Found at i:9408 original size:29 final size:29

Alignment explanation


    Indices: 9366--9432  Score: 125
    Period size: 29  Copynumber: 2.3  Consensus size: 29

       9356 GTAAGGCAGA

                                         
       9366 ATATATTTTGGGGTTTTGAAGATATGTTG
          1 ATATATTTTGGGGTTTTGAAGATATGTTG

                                 *       
       9395 ATATATTTTGGGGTTTTGAAGTTATGTTG
          1 ATATATTTTGGGGTTTTGAAGATATGTTG

                     
       9424 ATATATTTT
          1 ATATATTTT

       9433 AGGGAGGGGA


Statistics
Matches: 37,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  29   37  1.00

ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52


Consensus pattern (29 bp):   
ATATATTTTGGGGTTTTGAAGATATGTTG
Done.