Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005972.1 Corchorus capsularis cultivar CVL-1 contig05990, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11552

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
84--260
75
2.4
75
93
0
291
24
44
5
25
1.76
221--315
48
2.0
48
91
0
154
26
47
4
22
1.69
1282--1325
18
2.4
18
80
0
52
52
2
2
43
1.26
1289--1330
21
2.0
22
90
4
68
47
4
2
45
1.36
3402--3440
20
2.0
20
94
0
69
33
38
7
20
1.81
7164--7216
22
2.4
22
84
6
63
43
11
13
32
1.79
7220--7313
48
2.0
47
83
6
118
31
13
17
37
1.89
7203--7417
22
9.5
22
68
16
107
36
12
14
36
1.84
7385--7428
22
2.0
22
86
8
63
36
9
15
38
1.80
7505--7756
44
5.8
44
75
13
159
39
7
15
37
1.76
7505--7673
44
3.8
45
80
7
161
38
8
13
39
1.75
7505--7796
22
13.4
22
70
12
122
38
7
15
38
1.76
7740--7796
23
2.5
23
88
0
87
36
7
14
42
1.72
7916--7984
22
3.2
22
76
12
79
33
11
15
39
1.84
7916--7980
21
3.0
21
76
10
69
33
12
16
36
1.87
7927--7996
22
3.2
21
74
11
70
32
8
17
41
1.79
7916--8028
43
2.6
43
78
4
111
34
8
16
39
1.80
8000--8054
22
2.5
23
82
8
69
41
7
16
34
1.76
8087--8142
21
2.6
22
80
5
78
46
8
5
39
1.58
10837--11130
108
2.7
109
88
5
423
50
1
10
37
1.48

Tables:   1

The End!