Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005977.1 Corchorus capsularis cultivar CVL-1 contig05995, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3465
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31


Found at i:1982 original size:64 final size:64

Alignment explanation


    Indices: 1881--2009  Score: 258
    Period size: 64  Copynumber: 2.0  Consensus size: 64

       1871 CGTAGACATC

                                                                            
       1881 AACTTTCACTGAAACAAAGTAATCCTCTTAACATCTTAAACAACTCCATTTGAATAATTGGTAT
          1 AACTTTCACTGAAACAAAGTAATCCTCTTAACATCTTAAACAACTCCATTTGAATAATTGGTAT

                                                                            
       1945 AACTTTCACTGAAACAAAGTAATCCTCTTAACATCTTAAACAACTCCATTTGAATAATTGGTAT
          1 AACTTTCACTGAAACAAAGTAATCCTCTTAACATCTTAAACAACTCCATTTGAATAATTGGTAT

             
       2009 A
          1 A

       2010 GGAACAGACG


Statistics
Matches: 65,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  64   65  1.00

ACGTcount: A:0.40, C:0.20, G:0.08, T:0.33


Consensus pattern (64 bp):   
AACTTTCACTGAAACAAAGTAATCCTCTTAACATCTTAAACAACTCCATTTGAATAATTGGTAT
Done.