Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01005978.1 Corchorus capsularis cultivar CVL-1 contig05996, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43501
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Found at i:5513 original size:41 final size:41
Alignment explanation
Indices: 5480--5599 Score: 132
Period size: 41 Copynumber: 2.9 Consensus size: 41
5470 ATTTACTGGA
5480 GCAACAACTTCTAGTGTCAAAGGTAATTTTAATTTACCAAG
1 GCAACAACTTCTAGTGTCAAAGGTAATTTTAATTTACCAAG
* * * *
5521 GTAACAACTTCTGGTGTCAAAGGTAATTTCAATTTTTACCAAA
1 GCAACAACTTCTAGTGTCAAAGGTAATTTTAA--TTTACCAAG
** * * *
5564 GTGACAACCTCTTGTGTCAATGGTAGATTTTAATTT
1 GCAACAACTTCTAGTGTCAAAGGTA-ATTTTAATTT
5600 TATCTTTGTG
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
41 29 0.43
42 3 0.04
43 29 0.43
44 6 0.09
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.36
Consensus pattern (41 bp):
GCAACAACTTCTAGTGTCAAAGGTAATTTTAATTTACCAAG
Found at i:5601 original size:43 final size:42
Alignment explanation
Indices: 5483--5625 Score: 162
Period size: 43 Copynumber: 3.4 Consensus size: 42
5473 TACTGGAGCA
* * *
5483 ACAACTTCTAGTGTCAAAGGTAATTTTAA-TTTACCAAGGTA
1 ACAACTTCTTGTGTCAAAGGTAATTTTAATTTTACCAAAGTG
* *
5524 ACAACTTCTGGTGTCAAAGGTAATTTCAATTTTTACCAAAGTG
1 ACAACTTCTTGTGTCAAAGGTAATTTTAA-TTTTACCAAAGTG
* * * ***
5567 ACAACCTCTTGTGTCAATGGTAGATTTTAATTTTATCTTTGTG
1 ACAACTTCTTGTGTCAAAGGTA-ATTTTAATTTTACCAAAGTG
5610 ACAACTTCTTGTGTCA
1 ACAACTTCTTGTGTCA
5626 TTTATGTTTA
Statistics
Matches: 86, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
41 27 0.31
43 53 0.62
44 6 0.07
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.38
Consensus pattern (42 bp):
ACAACTTCTTGTGTCAAAGGTAATTTTAATTTTACCAAAGTG
Found at i:5712 original size:47 final size:46
Alignment explanation
Indices: 5608--5872 Score: 377
Period size: 47 Copynumber: 5.7 Consensus size: 46
5598 TTTATCTTTG
* * ** *
5608 TGACAACTTCTTGTGTCATTTATGTTTACTAAAGTAAGATTTAATT
1 TGACAACTTCTAGTGTCAATTAAATTTACTAAAGTAAAATTTAATT
5654 TGACAACTTCTAGTGTCAATTAAATTTACTAAAGTAAAATTTTAATT
1 TGACAACTTCTAGTGTCAATTAAATTTACTAAAGTAAAA-TTTAATT
*
5701 TGACAACTTCTAGTGTCAATTAAAGTTACTAAAGTAAAATTTAATT
1 TGACAACTTCTAGTGTCAATTAAATTTACTAAAGTAAAATTTAATT
* * * *
5747 TGACAACTTCTAGTGTCAATTAATTTTACTAAAATAAAAACTAAATT
1 TGACAACTTCTAGTGTCAATTAAATTTACTAAAGT-AAAATTTAATT
*
5794 TGACAACTTCTAGTGTCAATTAAATTTACTAATGTAAAATTTTAATT
1 TGACAACTTCTAGTGTCAATTAAATTTACTAAAGTAAAA-TTTAATT
* *
5841 TGACAACTCCTGGTGTCAATTAAAATTTACTA
1 TGACAACTTCTAGTGTCAATT-AAATTTACTA
5873 GAACTCTCGT
Statistics
Matches: 197, Mismatches: 18, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
46 77 0.39
47 110 0.56
48 10 0.05
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (46 bp):
TGACAACTTCTAGTGTCAATTAAATTTACTAAAGTAAAATTTAATT
Found at i:5730 original size:93 final size:93
Alignment explanation
Indices: 5608--5872 Score: 379
Period size: 93 Copynumber: 2.8 Consensus size: 93
5598 TTTATCTTTG
* * * *
5608 TGACAACTTCTTGTGTC-ATTTATGTTTACTAAAGTAAGATTTAATTTGACAACTTCTAGTGTCA
1 TGACAACTTCTAGTGTCAATTAAAG-TTACTAAAGTAAAATTTAATTTGACAACTTCTAGTGTCA
* ** *
5672 ATTAAATTTACTAAAGTAAAATTTTAATT
65 ATTAAATTTACTAAAATAAAAACTAAATT
5701 TGACAACTTCTAGTGTCAATTAAAGTTACTAAAGTAAAATTTAATTTGACAACTTCTAGTGTCAA
1 TGACAACTTCTAGTGTCAATTAAAGTTACTAAAGTAAAATTTAATTTGACAACTTCTAGTGTCAA
*
5766 TTAATTTTACTAAAATAAAAACTAAATT
66 TTAAATTTACTAAAATAAAAACTAAATT
* * * *
5794 TGACAACTTCTAGTGTCAATTAAATTTACTAATGTAAAATTTTAATTTGACAACTCCTGGTGTCA
1 TGACAACTTCTAGTGTCAATTAAAGTTACTAAAGTAAAA-TTTAATTTGACAACTTCTAGTGTCA
5859 ATTAAAATTTACTA
65 ATT-AAATTTACTA
5873 GAACTCTCGT
Statistics
Matches: 155, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
93 115 0.74
94 31 0.20
95 9 0.06
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (93 bp):
TGACAACTTCTAGTGTCAATTAAAGTTACTAAAGTAAAATTTAATTTGACAACTTCTAGTGTCAA
TTAAATTTACTAAAATAAAAACTAAATT
Found at i:6657 original size:23 final size:23
Alignment explanation
Indices: 6627--6672 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
6617 ACTAACTCTC
*
6627 TAGTATAAGATAACCACATTATA
1 TAGTATAAGATAAACACATTATA
6650 TAGTATAAGATAAACACATTATA
1 TAGTATAAGATAAACACATTATA
6673 AGAAACATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.50, C:0.11, G:0.09, T:0.30
Consensus pattern (23 bp):
TAGTATAAGATAAACACATTATA
Found at i:9792 original size:30 final size:30
Alignment explanation
Indices: 9715--10310 Score: 769
Period size: 30 Copynumber: 19.7 Consensus size: 30
9705 ATGATCTTAT
* ** **
9715 AATTGACACCAGAAGTTTTCAATGACCTTAT
1 AATTGACACCAGAAGTTGTC-ATGATTTTGC
* * * * * *
9746 AAATGACATCAAAAGTTGTCATGGTCTTAC
1 AATTGACACCAGAAGTTGTCATGATTTTGC
*
9776 AATTGACACCAGAAGTTGTCATGATTTTGT
1 AATTGACACCAGAAGTTGTCATGATTTTGC
* *
9806 AATTGACACCAGAAGTTGTCATCATTTTAC
1 AATTGACACCAGAAGTTGTCATGATTTTGC
* *
9836 AATTGACACCAGAAGTTGTCATCATATTGC
1 AATTGACACCAGAAGTTGTCATGATTTTGC
*
9866 AATTGACGCCAGAAGTTGTCATGATTTTGC
1 AATTGACACCAGAAGTTGTCATGATTTTGC
**
9896 AATTGACAGTAGAAGTTGTCATGATTTTGC
1 AATTGACACCAGAAGTTGTCATGATTTTGC
*
9926 AATTGACACCAGAAGTTGTCATGATTTTTC
1 AATTGACACCAGAAGTTGTCATGATTTTGC
* *
9956 AATTGACACTAAAAGTTGTCATGATTTTGC
1 AATTGACACCAGAAGTTGTCATGATTTTGC
**
9986 AATTGACACCAGAAGTTGTCATGACCTTGC
1 AATTGACACCAGAAGTTGTCATGATTTTGC
**
10016 AATTGACACCAGAAGTTGTCATGACCTTGC
1 AATTGACACCAGAAGTTGTCATGATTTTGC
* * *
10046 AAATGACACCAGAAGTTGTCATGCTATTGC
1 AATTGACACCAGAAGTTGTCATGATTTTGC
* * **
10076 AATTGACACTAGAAGTTGTCATCATTTTAA
1 AATTGACACCAGAAGTTGTCATGATTTTGC
* *
10106 AATTTACACCATAAGTTGTCATGATTTTGC
1 AATTGACACCAGAAGTTGTCATGATTTTGC
*
10136 AATTGACACTAGAAGTTGTCATGATTTTTGC
1 AATTGACACCAGAAGTTGTCATGA-TTTTGC
10167 AATTGACACCAGAAGTTGTCATGATTTTGC
1 AATTGACACCAGAAGTTGTCATGATTTTGC
10197 AATTGACACCAGAAGTTGTCATGATTTTGC
1 AATTGACACCAGAAGTTGTCATGATTTTGC
*
10227 AATTGACACCAGAAGTTGCCATGATTTTGC
1 AATTGACACCAGAAGTTGTCATGATTTTGC
*** * * *
10257 AATTGACAATTGAAGATGTCATAATTTTATTC
1 AATTGACACCAGAAGTTGTCATGA-TTT-TGC
10289 AATTGACACCAGAAGTTGTCAT
1 AATTGACACCAGAAGTTGTCAT
10311 ATACACCATG
Statistics
Matches: 494, Mismatches: 68, Indels: 5
0.87 0.12 0.01
Matches are distributed among these distances:
30 426 0.86
31 48 0.10
32 20 0.04
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (30 bp):
AATTGACACCAGAAGTTGTCATGATTTTGC
Found at i:10580 original size:118 final size:118
Alignment explanation
Indices: 10372--10716 Score: 636
Period size: 118 Copynumber: 2.9 Consensus size: 118
10362 TTCCCTTTTG
*
10372 GACACTAGAAGTTGACATTGTGCTTTAATTACATGTCTAGGCAAATTCTGTCTAAGGAGTTGGAT
1 GACACTAGAAGTTGTCATTGTGCTTTAATTACATGTCTAGGCAAATTCTGTCTAAGGAGTTGGAT
*
10437 TTTAAGTGAGACTGTTTGTGACTCCTCCATCTTTCCTGGGAATTTACCCATTT
66 TTTAAGTGAGACAGTTTGTGACTCCTCCATCTTTCCTGGGAATTTACCCATTT
10490 GACACTAGAAGTTGTCATTGTGCTTTAATTACATGTCTAGGCAAATTCTGTCTAAGGAGTTGGAT
1 GACACTAGAAGTTGTCATTGTGCTTTAATTACATGTCTAGGCAAATTCTGTCTAAGGAGTTGGAT
* *
10555 TTTAAGTGAGACCGTTTGTGACTCCTCCATCTTTCCTAGGAATTTACCCATTT
66 TTTAAGTGAGACAGTTTGTGACTCCTCCATCTTTCCTGGGAATTTACCCATTT
*
10608 GACACTAGAAGTTGTCATTGTGCTTTAATTACATATCTAGGCAAATTCTGTCTAAGGAGTTGGAT
1 GACACTAGAAGTTGTCATTGTGCTTTAATTACATGTCTAGGCAAATTCTGTCTAAGGAGTTGGAT
*
10673 TTTAAGTGAGACAGTTTGTGACTCCTCCATTTTTCCTGGGAATT
66 TTTAAGTGAGACAGTTTGTGACTCCTCCATCTTTCCTGGGAATT
10717 CACCTGGTGT
Statistics
Matches: 220, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
118 220 1.00
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.37
Consensus pattern (118 bp):
GACACTAGAAGTTGTCATTGTGCTTTAATTACATGTCTAGGCAAATTCTGTCTAAGGAGTTGGAT
TTTAAGTGAGACAGTTTGTGACTCCTCCATCTTTCCTGGGAATTTACCCATTT
Found at i:12651 original size:33 final size:33
Alignment explanation
Indices: 12588--12651 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
12578 ATACTGAATA
* **
12588 ATATTGCCCTTGAAGAGGCATAAATTCATGAGC
1 ATATTGCCCCTGAAGAGGCATAAACCCATGAGC
* *
12621 ATATTGCCCCTGTAGTGGCATAAACCCATGA
1 ATATTGCCCCTGAAGAGGCATAAACCCATGA
12652 AAAGATCACT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (33 bp):
ATATTGCCCCTGAAGAGGCATAAACCCATGAGC
Found at i:14608 original size:119 final size:123
Alignment explanation
Indices: 14310--14614 Score: 313
Period size: 126 Copynumber: 2.5 Consensus size: 123
14300 AAGTGCGTTG
*
14310 CACTCTTTTTCCCTTATGA-TCGGTTTTGTCCCACAGGATTTTCCGACTTAAGGTTTTTAATGAG
1 CACTCTTTTTCCCTTATGACT-GGTTTTGTCCCACTGGATTTTCCGACTTAAGGTTTTTAATGAG
* * ** **
14374 GCAACAATAGCACATTTAGATGTAATTGTCTTGAAGACATTTACATGGACTTAATTGCTCTAA
65 GCAAAAAGAGCACATGCAGA-GTAATTGTCCAGAAGACA--TACATGGACTTAATTGC-CTAA
* * * * **
14437 AACTCTTTTTCCCTTCTGTC-GGTTTTGTCCCACTAGATTTTCCGACACAAGGTTTTTAATGAGG
1 CACTCTTTTTCCCTTATGACTGGTTTTGTCCCACTGGATTTTCCGACTTAAGGTTTTTAATGAGG
* *
14501 CAATAAAGAGCACATGCA-A-TATTTGTCCAGAAGACA-A-ATGGACTTGATATG-C-AA
66 CAA-AAAGAGCACATGCAGAGTAATTGTCCAGAAGACATACATGGACTTAAT-TGCCTAA
* * *
14555 CACTCTTTTTTCCTTATGACTGGTTTTGTCCCATTGGGTTTTCC-AGCTTAAGGTTTTTAA
1 CACTCTTTTTCCCTTATGACTGGTTTTGTCCCACTGGATTTTCCGA-CTTAAGGTTTTTAA
14615 CGAGACACTA
Statistics
Matches: 149, Mismatches: 24, Indels: 18
0.78 0.13 0.09
Matches are distributed among these distances:
118 19 0.13
119 33 0.22
120 10 0.07
121 3 0.02
124 14 0.09
126 44 0.30
127 26 0.17
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.38
Consensus pattern (123 bp):
CACTCTTTTTCCCTTATGACTGGTTTTGTCCCACTGGATTTTCCGACTTAAGGTTTTTAATGAGG
CAAAAAGAGCACATGCAGAGTAATTGTCCAGAAGACATACATGGACTTAATTGCCTAA
Found at i:15135 original size:24 final size:25
Alignment explanation
Indices: 15090--15136 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
15080 ATAATAAGTA
*
15090 CCAAAAAGAAATGCATTTTTTTAGT
1 CCAAAAAGAAATGCATTATTTTAGT
15115 CCAAAAAGAAATGCA-TATTTTA
1 CCAAAAAGAAATGCATTATTTTA
15137 ATATCTATCC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.45, C:0.13, G:0.11, T:0.32
Consensus pattern (25 bp):
CCAAAAAGAAATGCATTATTTTAGT
Found at i:18854 original size:3 final size:3
Alignment explanation
Indices: 18846--18873 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
18836 GAGTAGAGGT
18846 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
18874 CAATAGCATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:19585 original size:17 final size:17
Alignment explanation
Indices: 19563--19598 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
19553 TACTCTTAAA
19563 ATCAGTCTCATTGTTGC
1 ATCAGTCTCATTGTTGC
19580 ATCAGTCTCATTGTTGC
1 ATCAGTCTCATTGTTGC
19597 AT
1 AT
19599 TATGGGGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.19, C:0.22, G:0.17, T:0.42
Consensus pattern (17 bp):
ATCAGTCTCATTGTTGC
Found at i:27549 original size:20 final size:20
Alignment explanation
Indices: 27524--27567 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
27514 GCTCTACTGC
27524 CTCTGTCCTCCTTTCCCTTT
1 CTCTGTCCTCCTTTCCCTTT
27544 CTCTGTCCTCCTTTCCCTTT
1 CTCTGTCCTCCTTTCCCTTT
27564 CTCT
1 CTCT
27568 ATTACAACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.00, C:0.45, G:0.05, T:0.50
Consensus pattern (20 bp):
CTCTGTCCTCCTTTCCCTTT
Found at i:30109 original size:10 final size:10
Alignment explanation
Indices: 30086--30116 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
30076 ATTTAACCTT
30086 AACTTTCA-A
1 AACTTTCAGA
30095 AACTTTCAGA
1 AACTTTCAGA
30105 AACTTTCAGA
1 AACTTTCAGA
30115 AA
1 AA
30117 ATTTTCTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 8 0.38
10 13 0.62
ACGTcount: A:0.45, C:0.19, G:0.06, T:0.29
Consensus pattern (10 bp):
AACTTTCAGA
Found at i:30224 original size:168 final size:168
Alignment explanation
Indices: 29944--30251 Score: 607
Period size: 168 Copynumber: 1.8 Consensus size: 168
29934 ACCAAACTCA
29944 AGAAAATTTTCTTCTTTTTTTCTCATTTTCGACTTTTTAAGAGCACCCTTTCTGTTAATCCTTGT
1 AGAAAATTTTCTTCTTTTTTTCTCATTTTCGACTTTTTAAGAGCACCCTTTCTGTTAATCCTTGT
*
30009 CTCCTTTGAACATGAAATATGGATTCTTCAATTCAAAAAACATATATTCCACCCAAAACTTTCAG
66 CTCCTTTGAACATGAAATATGGATTCTTCAATTCAAAAAAAATATATTCCACCCAAAACTTTCAG
30074 AAATTTAACCTTAACTTTCAAAACTTTCAGAAACTTTC
131 AAATTTAACCTTAACTTTCAAAACTTTCAGAAACTTTC
30112 AGAAAATTTTCTTCTTTTTTTCTCATTTTCGACTTTTTAAGAGCACCCTTTCTGTTAATCCTTGT
1 AGAAAATTTTCTTCTTTTTTTCTCATTTTCGACTTTTTAAGAGCACCCTTTCTGTTAATCCTTGT
30177 CTCCTTTGAACATGAAATATGGATTCTTCAATTCAAAAAAAATATATTCCACCCAAAACTTTCAG
66 CTCCTTTGAACATGAAATATGGATTCTTCAATTCAAAAAAAATATATTCCACCCAAAACTTTCAG
30242 AAATTTAACC
131 AAATTTAACC
30252 ACTGAAAAAT
Statistics
Matches: 139, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
168 139 1.00
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.40
Consensus pattern (168 bp):
AGAAAATTTTCTTCTTTTTTTCTCATTTTCGACTTTTTAAGAGCACCCTTTCTGTTAATCCTTGT
CTCCTTTGAACATGAAATATGGATTCTTCAATTCAAAAAAAATATATTCCACCCAAAACTTTCAG
AAATTTAACCTTAACTTTCAAAACTTTCAGAAACTTTC
Found at i:31686 original size:90 final size:93
Alignment explanation
Indices: 31560--31740 Score: 271
Period size: 92 Copynumber: 2.0 Consensus size: 93
31550 TTGCAATCTC
* *
31560 TGGTTTAGTTAATGTATAGTAGAATGAAGTATTTTGG-T-TATCTTTTTGTCATTGGCCAAGATG
1 TGGTTTAGTTAATGTATAGCAGAATGAAGTATTTTGGTTATATATTTTTGTCATTGGCCAAGATG
31623 CTTTTGCATTGGATTT-TCATCCAAGATG
66 CTTTTGCATTGGATTTAT-ATCCAAGATG
* * *
31651 TGGTTTGGTT-ATGTATAGCATAGTGAAGTATTTTGGTTATATATTTTTGTCATTGGCCAAGATG
1 TGGTTTAGTTAATGTATAGCAGAATGAAGTATTTTGGTTATATATTTTTGTCATTGGCCAAGATG
*
31715 CTTTTGTATTGGATTTATATCCAAGA
66 CTTTTGCATTGGATTTATATCCAAGA
31741 CATAGGAGTA
Statistics
Matches: 81, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
90 23 0.28
91 10 0.12
92 47 0.58
93 1 0.01
ACGTcount: A:0.24, C:0.09, G:0.22, T:0.45
Consensus pattern (93 bp):
TGGTTTAGTTAATGTATAGCAGAATGAAGTATTTTGGTTATATATTTTTGTCATTGGCCAAGATG
CTTTTGCATTGGATTTATATCCAAGATG
Found at i:33254 original size:31 final size:32
Alignment explanation
Indices: 33212--33273 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 32
33202 TTTGTAAAAA
33212 AAAAATTGGAGGGGTAAATTGGAGAAGTTAAT
1 AAAAATTGGAGGGGTAAATTGGAGAAGTTAAT
*
33244 AAAAA-TGGAGGGGTAATTTGGAGAAGTTAA
1 AAAAATTGGAGGGGTAAATTGGAGAAGTTAA
33274 GTGTGAGTAG
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 24 0.83
32 5 0.17
ACGTcount: A:0.44, C:0.00, G:0.32, T:0.24
Consensus pattern (32 bp):
AAAAATTGGAGGGGTAAATTGGAGAAGTTAAT
Done.