genome.fa.s5979.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005979.1 Corchorus capsularis cultivar CVL-1 contig05997, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81148

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
453--577	59	2.0	61	82	10	148	32	14	13	39	1.85
3837--3895	27	2.2	27	87	0	82	42	22	5	30	1.75
4054--4093	21	2.0	21	85	9	57	40	20	7	32	1.80
6929--6965	18	2.1	18	94	0	65	81	5	13	0	0.86
9045--9081	19	2.1	18	90	10	58	64	0	35	0	0.94
10348--10391	17	2.6	17	89	7	63	36	22	20	20	1.95
12280--12319	2	20.0	2	100	0	80	50	0	0	50	1.00
14266--14332	16	4.2	16	77	5	55	37	32	14	14	1.88
16473--16518	7	6.9	7	80	7	51	13	17	23	45	1.83
16472--16512	14	3.0	14	82	3	57	12	19	24	43	1.85
25669--25733	32	2.0	32	100	0	130	40	20	9	30	1.83
27744--27806	19	3.3	19	75	16	76	49	17	14	19	1.80
30133--30159	2	13.5	2	100	0	54	51	0	0	48	1.00
32828--32889	2	33.5	2	73	20	55	46	1	1	50	1.20
32831--32917	35	2.4	37	78	16	94	47	3	3	45	1.36
33127--33169	21	2.0	23	86	9	63	48	0	2	48	1.14
32654--33226	292	2.0	279	91	5	914	33	12	16	37	1.86
35241--35299	30	2.0	30	86	6	84	22	28	16	32	1.96
35642--35747	33	3.3	33	89	3	155	42	20	11	25	1.85
35773--35877	33	3.2	33	79	11	126	45	20	8	24	1.79
37273--37302	11	2.6	11	94	5	51	20	0	0	80	0.72
39810--39865	21	2.6	21	91	2	85	41	39	16	3	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39812--39865	11	5.1	10	84	6	63	40	38	16	3	1.66
42067--42127	21	3.0	20	74	11	54	27	13	8	50	1.69
42174--42348	27	6.3	27	69	23	132	16	25	3	55	1.56
42281--42367	19	4.2	19	71	21	66	13	22	2	60	1.44
42267--42404	7	20.6	7	67	19	80	16	23	2	57	1.50
42173--42400	46	4.9	46	78	10	232	16	24	3	56	1.55
42340--42383	20	2.3	19	84	11	54	15	25	0	59	1.37
42352--42428	35	2.2	35	88	2	111	18	22	3	55	1.58
42306--42478	81	2.2	80	88	2	249	17	22	2	56	1.54
42267--42529	127	2.1	128	86	5	363	17	21	3	57	1.56
42459--42493	15	2.3	15	90	0	52	22	17	5	54	1.64
42378--42596	95	2.3	97	84	3	309	18	19	5	57	1.58
42507--42542	12	2.8	13	87	12	56	19	22	2	55	1.56
42564--42985	22	20.1	21	76	11	350	19	19	6	54	1.65
42527--42784	7	35.9	7	66	9	90	17	19	6	56	1.62
42610--42687	36	2.2	36	88	4	113	17	20	8	52	1.71
47234--47328	35	2.7	35	88	0	127	36	17	10	34	1.85
47264--47330	35	1.9	35	100	0	134	34	16	10	38	1.83
47275--47336	19	3.4	19	65	13	58	37	16	9	37	1.81
47331--47373	21	2.0	21	86	0	59	41	18	2	37	1.63
47365--47479	43	2.7	43	91	2	189	37	18	8	35	1.82
47460--47497	18	2.1	18	95	0	67	36	21	7	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47421--47540	59	2.0	60	93	3	206	36	20	8	35	1.82
47477--47583	43	2.5	43	95	0	187	37	19	6	36	1.78
47514--47653	61	2.3	60	90	4	217	37	20	5	37	1.76
47557--47791	18	12.5	18	68	15	136	37	19	4	37	1.73
47614--47687	34	2.2	34	90	0	112	37	18	2	40	1.65
47553--47843	95	3.1	95	99	0	573	37	19	5	38	1.74
47709--47782	34	2.2	34	90	0	112	37	18	2	40	1.65
47514--47856	156	2.2	155	82	5	388	37	19	5	37	1.76
47817--47852	18	2.0	18	94	0	63	38	19	5	36	1.75
47830--47892	21	2.9	21	80	15	58	39	12	3	44	1.59
47755--47979	55	4.0	56	77	10	165	37	17	7	37	1.78
48928--48967	12	3.3	12	82	0	53	0	52	0	47	1.00
48942--48973	15	2.3	15	89	10	50	0	53	0	46	1.00
54849--54944	48	2.0	48	95	0	174	32	11	17	38	1.86
56977--57010	16	2.1	16	94	0	59	14	20	17	47	1.83
56999--57052	27	2.0	27	100	0	108	22	18	14	44	1.86
72052--72153	51	2.0	51	98	0	195	42	7	18	31	1.79
78144--78221	16	4.9	16	79	7	70	14	10	37	38	1.80
78378--78455	32	2.4	32	73	0	75	6	14	28	51	1.66
78378--78450	16	4.6	16	79	6	67	5	15	27	52	1.64

Tables:   1

The End!