Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005980.1 Corchorus capsularis cultivar CVL-1 contig05998, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26827

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3169--3219
17
3.0
17
72
11
59
25
27
3
43
1.72
3174--3228
17
3.2
17
75
10
58
20
29
5
45
1.73
3735--3779
22
2.0
22
86
0
63
44
8
37
8
1.67
4883--4912
2
15.5
2
93
6
53
50
0
0
50
1.00
9836--9863
2
14.0
2
100
0
56
50
0
0
50
1.00
18650--18689
21
1.9
21
84
0
53
17
25
25
32
1.97
23732--23822
32
2.8
32
88
0
101
17
8
35
38
1.81
23745--23805
16
3.9
15
72
10
50
13
8
39
39
1.74
23743--23836
32
2.9
32
88
0
107
15
10
37
36
1.83
24034--24104
16
4.5
15
77
8
63
7
11
28
53
1.62
24045--24110
32
2.1
32
85
0
87
7
12
27
53
1.65
24158--24186
14
2.0
15
93
6
51
0
17
41
41
1.49
24189--24650
229
2.0
229
99
0
906
20
19
26
32
1.97
26128--26179
20
2.6
19
82
14
52
57
7
3
30
1.45

Tables:   1

The End!