Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005981.1 Corchorus capsularis cultivar CVL-1 contig05999, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20979

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7843--7873
15
2.1
14
94
5
53
32
12
0
54
1.38
10886--10921
18
2.0
18
100
0
72
22
22
22
33
1.97
10891--10927
18
2.1
18
89
0
56
29
21
21
27
1.99
12130--12169
16
2.5
16
87
0
62
22
2
2
72
1.09
12130--12179
16
3.1
16
77
11
57
24
2
4
70
1.15
13896--13944
23
2.1
23
85
7
64
12
20
51
16
1.76
13758--14036
92
3.0
90
76
7
274
19
31
29
19
1.97
16858--16933
22
3.6
21
70
10
57
46
10
0
43
1.38
16860--16967
41
2.6
41
86
2
144
46
11
0
42
1.39
16879--16940
29
2.3
28
84
13
78
50
8
0
41
1.32
17423--17465
11
3.8
11
82
14
52
41
0
2
55
1.12
17424--17465
23
1.9
22
85
9
59
40
0
2
57
1.12
17751--17886
7
18.6
7
68
23
68
52
6
1
39
1.37
17772--17815
15
2.9
15
83
12
54
54
2
2
40
1.25
17836--17885
20
2.4
22
86
6
68
58
4
2
36
1.29
18019--18086
30
2.2
32
76
7
79
61
4
1
32
1.24
18040--18085
19
2.4
18
85
7
56
67
2
2
28
1.14
18042--18085
18
2.5
17
76
20
54
65
2
2
29
1.16
18026--18104
30
2.4
31
79
16
79
60
6
1
31
1.29
18166--18298
59
2.2
61
81
2
153
15
35
34
15
1.88

Tables:   1

The End!