Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005982.1 Corchorus capsularis cultivar CVL-1 contig06000, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50057

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8990--9076
16
5.4
16
73
10
70
51
27
12
8
1.67
8987--9076
32
2.8
32
87
0
144
52
27
12
7
1.66
9213--9317
31
3.4
30
90
4
147
38
38
10
13
1.79
9220--9304
15
5.5
15
77
10
91
38
34
10
16
1.83
9213--9341
31
4.1
32
84
7
117
38
38
10
11
1.77
9499--9531
17
1.9
17
93
0
57
36
15
3
45
1.61
10526--10584
31
1.9
31
86
6
84
47
3
13
35
1.60
10604--10643
13
3.2
13
92
3
64
47
0
17
35
1.48
10603--10641
17
2.3
18
86
8
55
46
0
17
35
1.49
12742--12799
28
2.1
28
86
0
80
37
10
15
36
1.82
12868--13672
426
1.9
426
84
2
1096
40
13
14
31
1.85
13987--14029
2
22.0
2
95
4
79
51
0
0
48
1.00
14824--15121
149
2.0
149
95
2
535
52
3
8
35
1.49
15271--15305
2
18.0
2
94
5
63
51
0
0
48
1.00
16634--16707
38
1.9
38
94
0
130
32
25
12
29
1.92
18913--18961
24
2.1
23
84
3
62
12
10
0
77
0.99
18933--18968
15
2.5
14
90
4
54
2
16
0
80
0.83
27861--27931
31
2.3
31
82
4
81
39
15
16
28
1.89
31596--31783
36
5.2
36
88
5
272
29
20
10
40
1.85
31617--31796
73
2.5
73
95
2
319
28
21
10
38
1.87
31826--31912
37
2.4
37
90
3
140
25
25
6
42
1.79
31987--32207
41
5.7
40
79
10
269
19
20
12
46
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31970--32205
77
3.1
77
93
0
391
20
20
12
46
1.83
32209--32685
45
10.6
45
85
5
648
24
16
12
46
1.82
32657--32980
37
8.9
36
89
4
420
25
20
9
44
1.82
36197--36595
44
9.1
44
86
3
545
31
21
21
25
1.98
36706--36862
59
2.6
59
80
4
190
29
22
27
21
1.99
36691--36972
60
4.7
61
76
7
202
30
21
25
23
1.99
44640--44672
17
1.9
17
88
11
50
27
15
15
42
1.86
44889--44942
22
2.5
22
84
3
74
57
3
12
25
1.52

Tables:   1

The End!