Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005985.1 Corchorus capsularis cultivar CVL-1 contig06003, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13787

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1911--2156
68
3.7
68
87
3
331
25
28
18
27
1.98
1914--2177
134
2.0
132
82
4
323
25
28
18
28
1.98
5049--5081
12
2.5
14
90
9
52
48
3
36
12
1.56
6618--6704
26
3.2
26
70
20
88
50
5
17
26
1.68
6618--6715
26
3.7
26
70
20
76
50
6
18
25
1.70
6618--6737
55
2.2
55
98
0
231
49
6
17
26
1.71
7045--7086
22
2.0
21
85
4
57
47
2
23
26
1.64
7088--7181
35
2.7
34
83
9
93
59
5
21
13
1.54
9132--9157
3
8.7
3
100
0
52
0
34
0
65
0.93
11025--11079
25
2.3
25
90
6
87
32
23
0
43
1.54
11099--11171
11
5.9
11
71
22
56
54
9
2
32
1.47
11089--11182
26
3.6
26
91
5
154
54
10
2
32
1.47
11266--11307
9
4.6
9
96
3
75
88
0
0
11
0.53
11266--11313
9
4.9
10
89
7
64
85
0
2
12
0.69
11391--11436
19
2.4
19
88
3
65
19
4
0
76
0.96
11403--11438
9
4.0
9
96
0
63
25
0
0
75
0.81
11577--11621
21
2.1
21
87
0
63
40
8
37
13
1.76

Tables:   1

The End!