Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005986.1 Corchorus capsularis cultivar CVL-1 contig06004, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 26718
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.17


Found at i:1588 original size:16 final size:18

Alignment explanation


    Indices: 1562--1594  Score: 52
    Period size: 17  Copynumber: 1.9  Consensus size: 18

       1552 CACAGGTGAT

                              
       1562 CGCGTCGCCAG-CAGCCA
          1 CGCGTCGCCAGACAGCCA

                             
       1579 CGCG-CGCCAGACAGCC
          1 CGCGTCGCCAGACAGCC

       1595 GTGCTCGCCG


Statistics
Matches: 15,  Mismatches: 0, Indels: 2
        0.88            0.00        0.12

Matches are distributed among these distances:
  16    6  0.40
  17    9  0.60

ACGTcount: A:0.18, C:0.48, G:0.30, T:0.03


Consensus pattern (18 bp):   
CGCGTCGCCAGACAGCCA

Done.