Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005987.1 Corchorus capsularis cultivar CVL-1 contig06005, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2520
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.37


Found at i:2272 original size:15 final size:15

Alignment explanation


    Indices: 2254--2284  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       2244 GCATCGGGCG

                           
       2254 TCTTTTTATTTTATT
          1 TCTTTTTATTTTATT

                   *       
       2269 TCTTTTTTTTTTATT
          1 TCTTTTTATTTTATT

             
       2284 T
          1 T

       2285 TAGCTTTCGC


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.10, C:0.06, G:0.00, T:0.84


Consensus pattern (15 bp):   
TCTTTTTATTTTATT
Done.