Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01005989.1 Corchorus capsularis cultivar CVL-1 contig06007, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7264
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.31


Found at i:4356 original size:21 final size:21

Alignment explanation


    Indices: 4287--4348  Score: 115
    Period size: 21  Copynumber: 3.0  Consensus size: 21

       4277 GTGGAGTTAC

                      *          
       4287 AGGTTTTGTGTGGAAGAAGAA
          1 AGGTTTTGTGGGGAAGAAGAA

                                 
       4308 AGGTTTTGTGGGGAAGAAGAA
          1 AGGTTTTGTGGGGAAGAAGAA

                                
       4329 AGGTTTTGTGGGGAAGAAGA
          1 AGGTTTTGTGGGGAAGAAGA

       4349 TGGTTTTTAA


Statistics
Matches: 40,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  21   40  1.00

ACGTcount: A:0.32, C:0.00, G:0.42, T:0.26


Consensus pattern (21 bp):   
AGGTTTTGTGGGGAAGAAGAA
Done.