Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005993.1 Corchorus capsularis cultivar CVL-1 contig06011, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30687

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1165--1257
45
2.1
45
87
4
134
45
27
3
23
1.68
1518--1551
3
11.3
3
100
0
68
32
0
0
67
0.91
3458--3559
33
3.1
33
86
0
150
29
17
21
31
1.96
4627--4652
3
8.7
3
100
0
52
30
0
0
69
0.89
4951--4997
24
2.0
24
91
0
76
27
23
27
21
1.99
5916--5943
1
28.0
1
100
0
56
0
0
0
100
0.00
5951--6019
35
2.0
34
86
11
95
27
18
30
23
1.98
8341--8613
28
9.8
28
81
3
300
20
19
32
26
1.97
8741--9167
149
2.9
149
90
1
631
20
19
26
33
1.96
9488--9512
13
1.9
13
100
0
50
44
8
16
32
1.76
10723--10763
20
2.0
20
85
0
55
19
17
9
53
1.70
16753--16948
97
2.0
97
98
0
383
24
20
19
35
1.96
21867--21961
47
2.0
49
89
4
149
47
4
18
29
1.68
24043--24317
36
7.7
35
78
6
205
48
10
14
26
1.76
24045--24184
73
1.9
73
86
2
201
49
10
13
26
1.75

Tables:   1

The End!