genome.fa.s5996.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005996.1 Corchorus capsularis cultivar CVL-1 contig06014, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  128247

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4598--4639	21	2.0	21	90	0	66	19	28	33	19	1.96
9885--9977	30	3.1	30	71	20	84	27	17	32	22	1.96
12742--12782	20	2.0	20	95	0	73	26	14	12	46	1.80
16697--16745	21	2.3	21	82	6	55	40	16	28	14	1.87
18619--18702	33	2.5	33	84	0	105	44	17	8	29	1.78
20423--22385	982	2.0	981	98	0	3800	32	22	16	28	1.95
24768--24809	21	2.0	21	95	0	75	19	30	33	16	1.94
24792--24895	33	3.2	33	75	9	104	23	42	24	10	1.85
25902--25938	10	3.6	10	88	3	56	83	2	0	13	0.74
30524--30564	21	2.0	21	85	9	57	48	21	9	19	1.77
32753--32790	21	1.9	20	89	10	60	15	10	0	73	1.09
38175--38225	7	7.4	7	91	8	79	13	0	43	43	1.44
53556--53586	16	1.9	16	93	0	53	16	9	19	54	1.68
53551--53593	20	2.1	21	82	4	52	13	13	18	53	1.73
53683--53732	18	2.5	19	78	15	57	20	10	24	46	1.81
53699--53729	9	3.4	9	100	0	62	22	9	22	45	1.81
54578--54637	31	1.9	31	83	10	77	36	13	15	35	1.86
55305--55337	11	3.0	11	90	0	57	30	0	18	51	1.46
57985--58071	29	3.0	29	94	0	147	24	26	25	24	2.00
61815--62159	90	3.8	90	89	0	528	24	30	27	17	1.97
62339--62461	45	2.7	46	80	2	158	44	26	15	13	1.84
63110--63485	44	8.7	43	89	3	542	42	25	15	16	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63110--63485	131	2.9	131	88	3	562	42	25	15	16	1.87
63589--64125	229	2.4	227	90	0	840	43	16	22	16	1.87
63589--64115	57	9.2	57	90	0	804	44	16	22	17	1.87
64467--64577	49	2.3	49	84	7	145	45	23	18	11	1.82
64844--64936	45	2.1	45	85	0	123	44	22	16	17	1.87
65018--65116	44	2.2	45	87	7	139	52	20	16	11	1.73
65140--65262	58	2.1	58	89	4	187	47	15	21	15	1.82
65694--66097	38	10.7	38	90	1	598	29	31	22	17	1.96
65694--66097	113	3.6	113	89	2	598	29	31	22	17	1.96
65694--66097	151	2.7	149	90	3	610	29	31	22	17	1.96
66216--66265	23	2.1	24	88	3	75	82	6	10	2	0.92
66227--66258	17	1.9	17	93	6	57	84	6	9	0	0.78
66730--66769	17	2.3	18	95	4	73	25	52	17	5	1.64
66790--66854	16	4.1	16	78	11	62	32	36	20	10	1.87
66808--66857	16	3.1	16	82	0	64	36	38	18	8	1.80
66968--67016	21	2.3	22	86	10	75	32	6	6	55	1.49
67486--67566	31	2.6	31	82	5	92	35	38	18	7	1.79
67473--67567	16	6.0	16	79	7	95	34	37	17	9	1.83
67722--67788	26	2.6	24	84	13	89	28	44	14	11	1.81
72875--72932	22	2.6	23	78	10	57	41	18	8	31	1.81
72890--72936	21	2.1	23	84	11	62	36	21	6	36	1.79
73036--73538	22	22.7	22	69	11	138	36	14	10	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73663--74056	22	17.7	22	69	13	173	33	16	10	39	1.82
73952--74076	44	2.8	43	74	9	108	36	16	10	37	1.82
74099--74298	22	8.8	22	71	13	122	37	19	10	33	1.85
74161--74294	44	3.0	43	81	8	135	34	17	11	36	1.86
74460--74498	20	2.0	20	85	10	53	64	2	5	28	1.28
77171--77420	127	2.0	127	100	0	500	26	12	18	43	1.84
90105--90181	30	2.6	30	87	6	104	36	36	12	14	1.84
90513--90566	28	1.9	28	85	7	74	12	24	25	37	1.91
94465--94499	8	4.4	8	96	0	61	60	37	2	0	1.12
95598--95824	51	4.5	51	78	7	248	40	3	17	39	1.66
96524--97160	41	14.8	41	76	12	477	15	24	20	39	1.91
96545--97487	87	10.7	87	75	15	591	14	24	20	40	1.90
96604--97304	48	15.8	47	78	13	335	14	25	19	39	1.90
96781--96997	95	2.4	95	83	8	272	16	26	18	38	1.92
97049--97160	40	2.8	39	85	2	170	15	25	21	37	1.92
97130--97487	48	7.6	48	82	7	421	13	24	20	41	1.88
97322--97487	89	1.9	88	84	1	224	12	22	21	43	1.86
97130--97487	184	1.9	188	84	5	474	13	24	20	41	1.88
113912--113952	21	2.0	21	85	9	57	12	12	12	63	1.53
114131--114166	19	1.9	18	88	5	54	41	2	22	33	1.68
123149--123256	33	3.3	32	83	5	108	22	42	26	8	1.81
124189--124222	8	4.1	8	85	7	50	58	14	2	23	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124301--124332	5	6.4	5	92	0	55	81	0	0	18	0.70
124295--124332	15	2.5	15	86	0	58	81	0	0	18	0.69

Tables:   1

The End!