Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000060.1 Corchorus capsularis cultivar CVL-1 contig00060, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1734
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37


Found at i:1670 original size:75 final size:75

Alignment explanation


    Indices: 1521--1734  Score: 349
    Period size: 75  Copynumber: 2.8  Consensus size: 75

       1511 TTGATATTTT

                     *      *                        *  *      *             
       1521 CTAAATCTCGCACAATCTGGCAAGATTTAGAGAAATATTCTTATTCTTTATAATT-TATTTATTT
          1 CTAAATCTCCCACAATTTGGCAAGATTTAGA-AAATATTCTCA-ACTTTATTATTAT-TTTATTT

                         
       1585 CTTAAAATATCTC
         63 CTTAAAATATCTC

                                                                             
       1598 CTAAATCTCCCACAATTTGGCAAGATTTAGAAAATATTCTCAACTTTATTATTATTTTATTTCTT
          1 CTAAATCTCCCACAATTTGGCAAGATTTAGAAAATATTCTCAACTTTATTATTATTTTATTTCTT

                      
       1663 AAAATATCTC
         66 AAAATATCTC

                                                                          
       1673 CTAAATCTCCCACAATTTGGCAAGATTTAGAAAATATTCTCAACTTTATTATTATTTTATTT
          1 CTAAATCTCCCACAATTTGGCAAGATTTAGAAAATATTCTCAACTTTATTATTATTTTATTT


Statistics
Matches: 131,  Mismatches: 5, Indels: 4
        0.94            0.04        0.03

Matches are distributed among these distances:
  75   91  0.69
  76   11  0.08
  77   29  0.22

ACGTcount: A:0.34, C:0.16, G:0.07, T:0.43


Consensus pattern (75 bp):   
CTAAATCTCCCACAATTTGGCAAGATTTAGAAAATATTCTCAACTTTATTATTATTTTATTTCTT
AAAATATCTC
Done.