Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006001.1 Corchorus capsularis cultivar CVL-1 contig06019, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55833

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18838--18942
54
1.9
54
94
0
183
54
7
20
18
1.67
22136--22173
19
2.0
20
90
10
62
26
31
5
36
1.79
22807--22844
19
2.0
20
90
10
62
26
31
5
36
1.79
26077--26165
2
47.5
2
71
16
57
46
2
4
47
1.35
26395--27421
435
2.3
434
84
4
1271
26
12
17
42
1.86
29640--29779
68
2.0
70
91
4
230
46
6
2
44
1.44
30723--30971
21
12.0
21
86
5
328
25
12
24
37
1.91
30732--30959
81
2.8
82
91
2
377
26
12
23
37
1.91
30945--31067
64
1.9
63
83
1
156
23
12
21
43
1.86
32844--32956
60
1.9
60
83
7
149
19
7
41
30
1.80
44145--44169
10
2.5
10
100
0
50
20
16
8
56
1.65
51630--51667
17
2.2
17
100
0
76
34
15
7
42
1.76
53652--53786
31
4.4
31
75
10
143
37
17
20
25
1.94
53623--53723
29
3.4
28
70
16
96
32
19
20
26
1.97
53592--53754
60
2.7
60
94
1
274
35
18
19
26
1.95
53870--53976
31
3.5
31
75
14
132
25
20
21
32
1.97
53813--53972
60
2.8
60
90
4
258
25
20
21
33
1.97

Tables:   1

The End!