Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006004.1 Corchorus capsularis cultivar CVL-1 contig06022, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44875

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
296--349
26
2.0
27
92
7
92
62
7
0
29
1.22
3467--3517
20
2.5
21
80
6
68
54
13
3
27
1.56
3906--3993
31
2.8
31
94
1
149
38
32
10
18
1.84
4927--4990
27
2.4
28
81
7
87
18
25
39
17
1.92
4943--4998
27
2.1
27
87
6
80
19
16
42
21
1.89
5233--5345
28
4.0
29
74
18
112
22
30
30
15
1.95
5236--5373
56
2.5
57
82
9
176
23
32
30
13
1.93
5830--5958
35
3.7
35
80
5
136
26
28
15
29
1.96
6235--6259
2
12.5
2
100
0
50
52
0
0
48
1.00
6696--6781
45
1.9
45
97
0
163
31
25
16
26
1.96
7075--7106
2
16.0
2
100
0
64
50
0
0
50
1.00
7389--7515
63
2.0
63
100
0
254
29
17
4
48
1.68
12140--12173
8
4.4
8
88
7
52
82
0
17
0
0.67
12142--12173
15
2.1
15
94
0
55
84
0
15
0
0.63
18264--18312
22
2.3
22
82
3
64
57
10
12
20
1.64
20316--20389
35
2.1
35
87
0
103
21
4
13
60
1.49
33314--33399
44
2.0
43
84
6
111
26
11
8
53
1.65
33559--33587
14
2.0
15
93
6
51
34
0
17
48
1.47
36864--36945
22
3.7
22
79
14
73
37
12
12
37
1.80
36879--36991
23
5.1
22
84
7
95
38
15
7
37
1.77
36907--36991
23
3.7
23
87
1
109
38
15
8
37
1.77
36891--36991
46
2.2
45
84
6
125
39
14
7
37
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37018--37136
22
5.4
22
70
9
82
29
15
11
42
1.83
37394--37458
25
2.8
24
84
11
82
33
10
10
44
1.74
37517--37885
66
5.5
65
69
13
205
37
17
8
36
1.81
37707--37882
44
4.0
44
80
11
155
38
18
9
33
1.83
37734--37882
44
3.3
43
83
7
156
37
16
10
34
1.84
37241--37883
22
28.9
22
67
19
130
35
15
9
39
1.80
37946--38001
19
3.0
19
74
10
62
62
0
8
28
1.25
38239--38291
22
2.4
22
84
6
63
32
13
13
41
1.82
38218--38346
62
2.1
62
92
0
213
33
13
10
42
1.79
38538--38594
23
2.5
23
80
11
64
40
15
12
31
1.85
38605--38662
23
2.5
23
100
0
116
41
10
5
43
1.61
38401--38851
22
20.7
21
68
15
179
36
16
10
37
1.82
38957--39031
22
3.5
22
81
1
89
33
14
10
41
1.81
39332--39389
30
1.9
31
89
3
91
44
0
18
36
1.50
39429--39467
16
2.4
17
91
4
62
51
0
15
33
1.44
39435--39473
10
4.3
10
75
24
50
51
0
17
30
1.46
40045--40119
37
2.0
37
89
0
114
17
30
5
46
1.70

Tables:   1

The End!